PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.I92X3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 552aa    MW: 60788.8 Da    PI: 7.7505
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.I92X3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.87.1e-17336382455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++ +L++l+P++      K +Ka++Le+A+eY+ksLq
  Aradu.I92X3 336 VHNLSERRRRDRINEKMRTLQQLIPNS-----NKTDKASMLEEAIEYLKSLQ 382
                  6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-20329395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.463332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-18335386No hitNo description
PfamPF000102.6E-14336382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-19336390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-17338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MMNNNSTIPG WNFESDACVI NQKSPIGLDQ DLVELLWKNG QVVLSSQTQR KPVQKSDASS  60
TLRNGVHCGN SSSNLSQQED ETASWIQYQV EDHPMGQELC SSNLLSQLTP CEVEAYKPIK  120
QLEEPKFAKF ATPNANLSPQ QQNNNTKPIN PMPAPRFQVA PDSSNQKTND FVGGSSSSQK  180
VPKFSHHFSA PAQQKFREKV NGNNNVLQSE GRECSVMTVG SSHCGSNNII PQEQDTTFSE  240
AVKDCVQRSV PNWSNNKGKS SEMIEATVTS SSGGSGSSLG KTTCSLSTGN HLSLKRKITD  300
ADESEEQSEA TQPKSGVGNK TSQRSGSSRR NRAAEVHNLS ERRRRDRINE KMRTLQQLIP  360
NSNKTDKASM LEEAIEYLKS LQLQLQVMWM GAGMTPVMFP GIQHYMSQMS AMGMAAASQP  420
SLPSMQNPMQ IPRMPLDQSN IPSTVSVPHH QTPSNQALMC QNPVLGAFNY QNHQMQNPCL  480
ADQYARYMAY HHLMQTASQP MNVFGYGSQA VQQSQTMMPP SNNNGTMNVA PNFEDAITAK  540
MGTSTFQQLN NN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340345ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015973333.10.0PREDICTED: transcription factor PIF4
RefseqXP_015973332.10.0PREDICTED: transcription factor PIF4
RefseqXP_015973331.10.0PREDICTED: transcription factor PIF4
RefseqXP_015973330.10.0PREDICTED: transcription factor PIF4
TrEMBLI1JJ020.0I1JJ02_SOYBN; Uncharacterized protein
STRINGGLYMA02G45150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.22e-61phytochrome interacting factor 4